File List

Here is a list of all files with brief descriptions:

[detail level 12]

initboundcode
bounds.koral.c	User Boundary conditions
init.koral.c	USER initial conditions for Koral/RAD simulations
init.koral.h	USER KORAL/RAD choices/switches
advance.c	Takes RK sub-step
boundmpi.c	Boundary conditions using MPI for core-overlapping cells for FTYPE quantities
boundmpiint.c	Boundary conditions using MPI for core-overlapping cells for pflag or other integer quantities
bounds.c	USER boundary condition routines (often calling things in bounds.tools.c)
bounds.funcdeclare.h	Boundary conditions declarations
bounds.tools.c	General or frequenty-used Boundary condition routines
boundsflux.c	User Boundary conditions for fluxes
boundsint.c	User Boundary conditions for PFTYPE for pflag type quantities
boundsvpot.c	User Boundary conditions for vector potential
coord.c	User coordinates and other coordinates stuff
coord.funcdeclare.h	Coordinates stuff (both user and general)
coord.h	User coordinates (defcoord) definitions
copyandinit_functions.c	Copy/init arrays
copyandinit_functions.funcdeclare.h	Copy/init array header
definit.h	Default values for code choices/switches appearing in user's init.h
defs.general.h	General code variable declarations: GLOBAL VARIABLES that are not for every point in space
defs.grmhd.h	Wrapper
defs.user.h	User type defs (but better to use init.c and extern unless for coord.c)
diag.c	Diagnostics subroutine
diag.funcdeclare.h	Diagnostics subroutine declarations
dump.c	File dumping
dump_ener.c	Time-dependence spatially-integrated diagnostics
dumpgen.c	General Data dump functions
eos.c	Equation of State general functions
eos.funcdeclare.h	Equation of State function declarations
f2c.h	Standard Fortran to C header file
fail.c	Functions to report when failure occurs and code stops
fixup.c	All routines related to fixing up solution when inversion fails or floors on densities are hit all fixup stuff only called for non-B advance
fixup.funcdeclare.h	Function declarations for fixup.c
flux.c	Routines for computing fluxes except those special routines directly related to FLUXB==FLUXCTSTAG or FLUXCTTOTH
flux.funcdeclare.h	Function declarations for flux.c
fluxcompute.c	Per-point calculations for getting flux
fluxct.c	TOTH CT method for preserving divb=0 (FLUXB==FLUXCTTOTH)
fluxctstag.c	All things related to FLUXB==FLUXCTSTAG
fluxvpot.c	All things related to vector potential: A_mu
fluxvpot.funcdeclare.h	Function declarations for fluxvpot.c
freespace.c	Get free space on disk
global.bounds.h	Function declarations (used globally) from bounds.tools.c
global.comploops.h	LOOPS (computational and not per-point)
global.depmnemonics.h	General code definitions of dependent quantities
global.depmnemonics.rad.h	RADIATION code definitions of dependent quantities
global.dump.h	Function declarations (used globally) for dump.c and dumpgen.c
global.fieldmacros.h	Magnetic field and divB=0 related macros
global.funcdeclare.h	Function declarations (used globally) by entire code
global.funcdeclare.rad.h	Function declarations (used globally) from RADIATION parts of code
global.funcdeclare.user.h	Function declarations (used globally) from USER parts of code
global.general.h	General code definitions with specific order from independent to dependent definitions
global.gridsectioning.h	Definitions and macros for grid sectioning
global.grmhd.h	Wrapper and Comments on comments
global.inits.h	Function declarations (used globally) from init.tools.c
global.loops.boundaries.h	Boundary Conditions Loop definitions/macros
global.loops.diagnostics.h	Diagnostic Loops and definitions/macros DIAGNOSTIC RELATED LOOPS
global.loops.h	Wrapper
global.loops.manypoints.h	Multi-point loop related definitions/macros
global.loops.manypoints1d.h	Multi-point 1D loop related definitions/macros
global.loops.perpoint.h	Single-point loop related definitions/macros PER-POINT LOOPS
global.mpi_grmhd_grray_liaison.h	Global definitions/macros that does LIAISON to connect Broderick ray tracing code and HARM
global.nondepmnemonics.h	General code definitions of independent quantities
global.nondepmnemonics.rad.h	General code definitions of independent quantities for RADIATION parts of code
global.openmploops.h	All macros and definitions related to OpenMP loop wrappers
global.openmpthreadprivates.h	All macros and definitions related to OpenMP private quantities
global.other.h	Other macros and definitions currently reltaed to ENO only
global.realdef.h	Macros and definitions related to variable types
global.stepch.h	Macros and definitions related to step_ch (RK stepping)
global.storage.h	Macros and definitions related to storage mapping functions
global.structs.h	Macros and definitions related to HARM structures
global.variousmacros.h	Macros and definitions related to various things Various macros
gslincludes.h	Macros and definitions for GSL library
idealgaseos.c	IDEAL GAS EOS functions
image.c	Image dumping
init.c	USER initial conditions (usually links to code in initbasecode directory)
init.h
init.tools.c	Generalized USER initial conditions routines that can be used for many different (but not all) initial conditions
initbase.boundloop.c	General initialization of code related to loops over boundary conditions
initbase.c	General initialization of code
initbase.enerregions.c	General initialization of code related to loops over active cells
initbase.funcdeclare.h	Function declarations for initbase.c functions used globally
initbase.gridsectioning.c	General initialization of code related to grid sectioning
initbase.tools.c	Functions that don't depend upon global quantities/functions
interpline.c	Spatial Interpolation for fluxes based upon providing full 1D line information Instead of acting per point, this acts per line to improve memory efficiency
interpline.para.c	Parabolic/PPM Spatial Interpolation for fluxes based upon providing full 1D line information Instead of acting per point, this acts per line to improve memory efficiency
interpline.smono.h	Function declarations for global use of functions in interpline.smono.c
interpline.smono_static.h	Sasha Mono static function declarations to be included elsewhere
interppoint.c	Spatial Interpolation for fluxes based upon providing each point Inefficient compared to interpline.c, but simpler
interppoint.para.c	Parabolic/PPM Spatial Interpolation for fluxes based upon providing each point / parabolic interpolation subroutin / ref. Colella && Woodward's paper / Colella, P., & Woodward, P. R. 1984, J. Comput. Phys., 54, 174-201 / / using zone-centered value of 5 continuous zones / to get left and right value of the middle zone. / / / Latest JCM version is para4()/parapl(): 02/25/08
jon_interp_coorduser.c
koral.mdefs.h	Mathematica source file C language definitions for use with Mathematica output Could add definitions for Random(), SeedRandom(), etc
main.c	Main file
makehead.inc	Header for makefile. Sets primary code compile conditionals
maketail.harm.inc	Tail for makefile for harm related files
maketail.inc	Tail for makefile with various final links
maketail.ldouble.deps.inc	Tail including dependencies for long double makefile. See scripts/longdouble2double.sh
maketail.ldouble.inc	Tail for long double makefile. See scripts/longdouble2double.sh
maketailsuperlong.inc	Tail for super long double makefile. See scripts/longdouble2double.sh
math.tools.c	Functions that don't depend upon any global things
metric.c	Sets metric in some coordinates based upon metric.h type choice for MCOORD this file includes metric dependent terms, including for initial condition routines for IC coords
metric.funcdeclare.h	Function delcarations for global use of functions in metric.c
metric.h	Metric Definitions and some metric related macros
metric.tools.c	Functions that don't depend upon global behavior of code that are used to compute things related to the metric or coordinates
metric.tools.funcdeclare.h	Function declarations for global use of things in metric.tools.c
mpi_fileio.c	Various file input/output using MPI functions Notes:
mpi_fprintfs.c	Various fprintf() calls that account for which core we are on Generally, myid=0 writes general full-core info, while all cores write specific core info
mpi_fprintfs.funcdeclare.h	Function declarations for global use of functions in mpi_fprintfs.c
mpi_grmhd_grray_liaison.c	Genreal MPI hooks to allow GRMHD or GRRAY+GRMHD to run together
mpi_init.c	Initialize MPI functions
mpi_init_grmhd.c	Initialize MPI functions specifically related to GRMHD code
mpi_set_arrays.c	Initialize MPI arrays
mpidefs.h	Variable definitions for MPI
mpidefs.mpi_grmhd_grray_liaison.h	Variable definitions for mpi_grmhd_grray_liaison.c
mympi.definit.h	Default MPI definitions/macros
mympi.global.depmnemonics.h	MPI dependent macros/definitions
mympi.global.funcdeclare.h	MPI function declarations to be used globally
mympi.global.loops.h	MPI loop definitions/macros
mympi.global.nondepmnemonics.h	MPI independent macros/definitions
mympi.h	General MPI wrapper for macros/definitions
mytime.c	Timing functions (report and diagnostics) OPENMPMARK: assume all mytime routines not called by multiple threads
mytime.h	Timing functions (report and diagnostics) declarations and definitions/macros
para_and_paraenohybrid.h	Macros/definitions for interppoint.para.c and interpline.para.c
phys.c	All globally-related physics calculations THINGS IN HERE ARE NOT PER POINT OR USE GLOBAL VARIABLES or call get_geometry()
phys.funcdeclare.h	Function declarations for global use of things in phys.c
phys.tools.c	All locally-related physics calculations THINGS IN HERE ARE PER-POINT and use only LOCAL variables (no globals)
phys.tools.funcdeclare.h	Function declarations for global use of things in phys.tools.c
phys.tools.rad.c	All locally-related Koral/RAD physics calculations
rescale_interp.c	Functions that rescale input primitives/conserves for interpolation purposes, and then functions that unrescale the result back to inputted type of quantities GENERAL PRIMITIVE INTERPOLATION CHANGE OF VARIABLES GODMARK: really should restrict rescale() to npr2interplist since may operate on quantity didn't want to change (to do this, just loop over PINTERPLOOP(pliter,pl) always and put conditional on each pl using if(pl==??)
restart.c	Functions related to restarting code and reading/writing rdump's restart functions; restart_init and restart_dump
restart.checks.c	Functions related to checking if restarting was correct/reasonable
restart.h	Function declarations for restart.c
set_arrays.c	Wrapper for setting up (allocation/pointer shifting, dummy assignment) of all per-point, 1D, and multi-D arrays
set_arrays_multidimen.c	Sets allocation, pointer shift, and dummy assignment for multi-dimen arrays
set_arrays_multidimen.rad.c	Sets allocation, pointer shift, and dummy assignment for multi-dimen arrays for RADIATION/Koral code
set_arrays_perpoint_perline.c	Sets allocation, pointer shift, and dummy assignment for per-point quantities or 1D arrays
set_grid.c	General initialization of grid (coordinates, metric, connection coefficients, etc.)
set_grid.funcdeclare.h	Function declarations for global use of set_grid.c functions
sources.c	Source physics and source geometry coordinate factors
step_ch.c	Code to take full RK step
superdefs.h	Large arrays large data structures not needed by liaison code
superdefs.pointers.h	Large array pointers
superdefs.pointers.rad.h	Large array pointers for Koral/RADIATION
superdefs.rad.h	Large arrays for Koral/RADIATION
supermpidefs.h	Large arrays for MPI
tetlapack_func_doubleonly.c	External related Tetrad calculations (double only)
tetrad.c	Tetrad related calculations
tetrad.funcdeclare.h	Function declarations for global use of tetrad.c functions
transforms.c	Coordinate and frame transformation functions
transforms.funcdeclare.h	Function declrations for global use of functions in transforms.c
u2p_defs.h	U->P inversion definitions for all utoprim files
u2p_util.c	U->P inversion functions used by all utoprim files
unconverted_by_double2longdouble.inc
utoprim_jon.c	Jon's U->P inversion
utoprim_jon.h	U->P inversion definitions for utoprim_jon.c
utoprim_jon_eos.c	EOS stuff for utoprim_jon.c FUNCTIONS ARE GENERAL for ANY EOS input variables may need to be expanded for more advanced EOS this file is actually just included in other files
utoprimgen.c	General extended feature wrapper for inversion U->P
utoprimgen.funcdeclare.h	Function declrations for global use of functions in utoprimgen.c
vchar.c	Compute characteristics calculate components of magnetosonic velocity corresponding to primitive variables p Based upon cfg 7-10-01
wavespeeds.c	Wrapper for using vchar and storing wavespeed results
wavespeeds.funcdeclare.h	Function declrations for global use of functions in wavespeeds.c